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%% biblio MODEMIC 2008 - 2013		 
		 
		 
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%% ACL In Press
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@article{Art8,
   author = {\underline{Benyahia}, B. and \underline{Sari}, T. and Cherki, B. and Harmand, J.},
   title = {Bifurcation and stability analysis of a two steps model for monitoring anaerobic digestion processes},
   journal = {Journal of Process Control},
   volume = {22},
   number = {6},
   pages = {1008-1019},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1016/j.jprocont.2012.04.012},
   UT_WOS = { WOS:000306046800007},

},


@article{Art9,
   author = {\underline{Benyahia}, B. and \underline{Sari}, T. and Cherki, B. and Harmand, J.},
   title = {Anaerobic Membrane BioReactor modeling in the presence of Soluble Microbial Products ({SMP}) - the Anaerobic Model {AM2b}},
   journal = {Chemical Engineering Journal},
   volume = {228},
   pages = {1011-1022},
   note = {},
   year = {2013},
   AERES = {ACL},
   DOI = {10.1016/j.cej.2013.05.073},

},

@article{Art13,
   author = {Boudjellaba, H. and \underline{Sari}, T.},
   title = {Dynamic transcritical bifurcations in a class of slow fast predator prey models},
   journal = {Journal of Differencial Equations},
   volume = {46},
   number = {6},
   pages = {2205-2225},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1016/j.jde.2009.01.001},
   UT_WOS = {WOS:000264013600003},

},

@article{Art15,
   author = {\underline{\bf Campillo}, F. and Cantet, P. and Rakotozafy, R. and Rossi, V.},
   title = {Méthodes {MCMC} en interaction pour l'évaluation de ressources naturelles},
   journal = {ARIMA},
   volume = {8},
   pages = {64-80},
   note = {},
   year = {2008},
   AERES = {ACL},
   URL = {},
},

@article{Art16,
   author = {\underline{\bf Campillo}, F. and Champagnat, N.},
   title = {Simulation and analysis of an individual-based model for graph-structured plant dynamics},
   journal = {Ecological Modelling},
   volume = {234},
   pages = {93-105},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1016/j.ecolmodel.2012.03.017},
   UT_WOS = {WOS:000304636500010},

},

@article{Art17,
   author = {\underline{\bf Campillo}, F. and Godin, C. and \underline{\bf Rapaport}, A.},
   title = {Modéliser les plantes et leurs utilisations},
   journal = {LISA (INRIA Sophia-Antipolis) No. 12},
   volume = {},
   pages = {},
   note = {},
   year = {2008},
   AERES = {ASCL},

},

@article{Art18,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M. and Larramendy-Valverde, I.},
   title = {Stochastic modeling of the chemostat},
   journal = {Ecological Modelling},
   volume = {222},
   number = {15},
   pages = {2676-2689},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.1016/j.ecolmodel.2011.04.027},
   UT_WOS = {WOS:000294105500009},
   URL = {},
},

@article{Art19,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M. and Larramendy-Valverde, I.},
   title = {Approximation of the {F}okker-{P}lanck equation of the stochastic chemostat},
   journal = {Mathematics and Computers in Simulation},
   note = {},
   year = {2013},
   AERES = {ACL In Press},
   DOI = {10.1016/j.matcom.2013.04.012},
   UT_WOS = {In Press},

},

@article{Art20,
   author = {\underline{\bf Campillo}, F. and \underline{Lobry}, C.},
   title = {Effect of population size in a predator-prey model},
   journal = {Ecological Modelling},
   volume = {246},
   pages = {1-10},
   note = {},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1016/j.ecolmodel.2012.07.015},
   UT_WOS = {WOS:000310255100001},
   URL = {},
},

@article{Art21,
   author = {\underline{\bf Campillo}, F. and Rakotozafy, R. and Rossi, V.},
   title = {Computational probability modeling and Bayesian inference},
   journal = {ARIMA},
   volume = {9},
   number = {Spécial issue in honor of C. Lobry},
   pages = {123-143},
   note = {},
   year = {2008},
   AERES = {ACL},
   URL = {},
},

@article{Art22,
   author = {\underline{\bf Campillo}, F. and Rakotozafy, R. and Rossi, V.},
   title = {Parallel and interacting Markov chain {M}onte {C}arlo algorithm},
   journal = {Mathematics and Computers in Simulation},
   volume = {79},
   pages = {3424-3433},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1016/j.matcom.2009.04.010},
   UT_WOS = {WOS:000269289100006},
   URL = {},
},

@article{Art23,
   author = {\underline{\bf Campillo}, F. and Rossi, V.},
   title = {Convolution filter based methods for parameter estimation in general state--space models},
   journal = {IEEE Transactions on Aerospace and Electronic Systems},
   volume = {45},
   number = {3},
   pages = {1063-1071},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1109/taes.2009.5259183},
   UT_WOS = {WOS:000270225500017},
   URL = {},
},

@article{Art32,
   author = {\underline{Deygout}, C. and Lesne, A. and \underline{\bf Campillo}, F. and \underline{\bf Rapaport}, A.},
   title = {Homogenised model linking microscopic and macroscopic dynamics of a biofilm: Application to growth in a plug flow reactor},
   journal = {Ecological Modelling},
   volume = {250},
   pages = {15-24},
   note = {},
   year = {2013},
   AERES = {ACL},
   DOI = {10.1016/j.ecolmodel.2012.10.020},
   UT_WOS = {WOS:000315246100002},
   URL = {},
},


@article{Art35,
   author = {Dramé, A.K. and \underline{Lobry}, C. and Harmand, J. and \underline{\bf Rapaport}, A. and \underline{Mazenc}, F.},
   title = {Multiple stable equilibrium profiles in tubular bioreactors},
   journal = {Mathematical and Computer Modelling},
   volume = {48},
   number = {11-12},
   pages = {1840-1853},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1016/j.mcm.2008.05.008},
   UT_WOS = {WOS:000260757700019},
   URL = {},
},

@article{Art37,
   author = {Dumont, M. and Harmand, J. and \underline{\bf Rapaport}, A. and Godon, J.-J.},
   title = {Towards functional molecular fingerprints},
   journal = {Environmental Microbiology},
   volume = {11},
   pages = {1717-1727},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1111/j.1462-2920.2009.01898.x},
   UT_WOS = {WOS:000267660700009},
   URL = {},
},

@article{Art38,
   author = {\underline{El Hajji}, M. and Harmand, J. and Chaker, H. and \underline{Lobry}, C.},
   title = {Association between competition and obligate mutualism in a chemostat},
   journal = {Journal of Biological Dynamics},
   volume = {3},
   number = {6},
   pages = {635 - 647},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1080/17513750902915978},

},

@article{Art39,
   author = {\underline{El Hajji}, M. and \underline{Mazenc}, F. and Harmand, J.},
   title = {A mathematical study of a syntrophic relationship of a model of anaerobic digestion process},
   journal = {Mathematical Biosciences and Engineering},
   volume = {7},
   number = {3},
   pages = {641-656},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.3934/mbe.2010.7.641},
   UT_WOS = { WOS:000278587100009},
   URL = {http://www.ncbi.nlm.nih.gov/pubmed?term=20578790},
},

@article{Art40,
   author = {\underline{El Hajji}, M. and \underline{\bf Rapaport}, A.},
   title = {Practical coexistence of two species in the chemostat - A slow-fast characterization},
   journal = {Mathematical Biosciences},
   volume = {218},
   number = {1},
   pages = {33-39},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1016/j.mbs.2008.12.003},
   UT_WOS = {WOS:000264515000004},
   URL = {http://www.ncbi.nlm.nih.gov/pubmed?term=19141299},
},

@article{Art42,
   author = {Etienne, R. S. and \underline{Haegeman}, B.},
   title = {The neutral theory of biodiversity with random fission speciation},
   journal = {Theoretical Ecology},
   volume = {4},
   number = {1},
   pages = {87-109},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.1007/s12080-010-0076-y},
   UT_WOS = {WOS:000286463900007},
   URL = {},
},

@article{Art43,
   author = {Etienne, R. S. and \underline{Haegeman}, B.},
   title = {A conceptual and statistical framework for adaptive radiations with a key role for diversity dependence},
   journal = {American Naturalist},
   volume = {180},
   number = {4},
   pages = {E75-E89},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1086/667574},
   UT_WOS = {WOS:000308910600001},
   URL = {},
},


@article{Art45,
   author = {Etienne, R. S. and \underline{Haegeman}, B. and Stadler, T. and Aze, T. and Pearson, P. N. and Purvis, A. and Phillimore, A. B.},
   title = {Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record},
   journal = {Proceedings of the Royal Society B-Biological Sciences},
   volume = {279},
   number = {1732},
   pages = {1300-1309},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1098/rspb.2011.1439},
   UT_WOS = {WOS:000300822400007},
   URL = {},
},

@article{Art48,
   author = {\underline{Kekih Salem}, R. and Harmand, J. and \underline{Lobry}, C. and \underline{\bf Rapaport}, A. and \underline{Sari}, T.},
   title = {Extensions of the chemostat model with flocculation},
   journal = {Journal of Mathematical Analysis and Applications},
   volume = {397},
   number = {1},
   pages = {292-306},
   year = {2013},
   AERES = {ACL},
   DOI = {10.1016/j.jmaa.2012.07.055},
   UT_WOS = {WOS:000309381100025},
   URL = {http://www.sciencedirect.com/science/article/pii/S0022247X1200618X},
},

@article{Art50,
   author = {\underline{Kekih Salem}, R. and \underline{Sari}, T. and Abdellatif, N.},
   title = {Sur un modèle de compétition et de coexistence dans le chemostat},
   journal = {ARIMA},
   volume = {14},
   pages = {15-30},
   note = {},
   year = {2011},
   AERES = {ACL},
   URL = {},
},

@article{Art51,
   author = {Gajardo, P. and Harmand, J. and Ramirez, H. and \underline{\bf Rapaport}, A.},
   title = {Minimal time bioremediation of natural water resources},
   journal = {Automatica},
   volume = {47},
   number = {8},
   pages = {1764-1769},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.1016/j.automatica.2011.03.001},
   UT_WOS = { WOS:000295344600025},
   URL = {},
},

@article{Art52,
   author = {Gajardo, P. and \underline{Mazenc}, F. and Ramirez, H.},
   title = {Competitive Exclusion Principle in a Model of Chemostat with Delays},
   journal = {Dynamics of Continuous, Discrete and Impulsive Systems},
   volume = {16},
   number = {2},
   pages = {253-272},
   note = {},
   year = {2009},
   AERES = {ACL},
   URL = {},
},

@article{Art53,
   author = {Gajardo, P. and Ramirez, H. and \underline{\bf Rapaport}, A.},
   title = {Minimal time sequential batch reactors with bounded and impulse controls for one or more species},
   journal = {SIAM Journal on Control and Optimization},
   volume = {47},
   number = {6},
   pages = {2827-2856},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1137/070695204},
   UT_WOS = {WOS:000263103300005},
   URL = {},
},

@article{Art54,
   author = {Gaucherel, C. and \underline{\bf Campillo}, F. and Misson, L. and Guiot, J. and Boreux, J.J.},
   title = {Parameterization of a process-based tree-growth model: comparison of optimization, {MCMC} and particle filtering algorithms},
   journal = {Environmental Modelling and Software},
   volume = {23},
   number = {10-11},
   pages = {1280-1288},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1016/j.envsoft.2008.03.003},
   UT_WOS = {WOS:000257620800007},
   URL = {},
},

@article{Art69,
   author = {\underline{Haegeman}, B. and Etienne, R. S.},
   title = {Neutral Models with Generalised Speciation},
   journal = {Bulletin of Mathematical Biology},
   volume = {71},
   number = {6},
   pages = {1507-1519},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1007/s11538-009-9411-0},
   UT_WOS = {WOS:000267895200010},
   URL = {http://www.ncbi.nlm.nih.gov/pubmed?term=19280265},
},

@article{Art70,
   author = {\underline{Haegeman}, B. and Etienne, R. S.},
   title = {Entropy maximization and the spatial distribution of species},
   journal = {American Naturalist},
   volume = {175},
   number = {4},
   pages = {E74-E90},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1086/650718},
   UT_WOS = {WOS:000275167100010},
   URL = {http://www.ncbi.nlm.nih.gov/pubmed?term=20166816},
},

@article{Art71,
   author = {\underline{Haegeman}, B. and Etienne, R. S},
   title = {Self-consistent approach for neutral community models with speciation},
   journal = {Physical Review E Statistical Nonlinear and Soft Matter Physics},
   volume = {81},
   number = {3},
   pages = {13 p.},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1103/PhysRevE.81.031911},
   UT_WOS = {WOS:000276199300094},
   URL = {},
},

@article{Art72,
   author = {\underline{Haegeman}, B. and Etienne, R. S.},
   title = {Independent species in independent niches behave neutrally},
   journal = {Oikos},
   volume = {120},
   number = {7},
   pages = {961 963},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.1111/j.1600-0706.2011.19697.x},
   UT_WOS = {WOS:000292114300001},
   URL = {},
},

@article{Art73,
   author = {\underline{Haegeman}, B. and Loreau, M.},
   title = {Trivial and non-trivial applications of entropy maximization in ecology: a reply to {S}hipley},
   journal = {Oikos},
   volume = {118},
   number = {8},
   pages = {1270-1278},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1111/j.1600-0706.2009.17560.x},
   UT_WOS = {WOS:000268535300018},
   URL = {},
},

@article{Art74,
   author = {\underline{Haegeman}, B. and Loreau, M.},
   title = {A mathematical synthesis of niche and neutral theories in community ecology},
   journal = {Journal of Theoretical Biology},
   volume = {269},
   number = {1},
   pages = {150-165},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.1016/j.jtbi.2010.10.006},
   UT_WOS = {WOS:000286173000016},
   URL = {},
},

@article{Art75,
   author = {\underline{Haegeman}, B. and \underline{\bf Rapaport}, A.},
   title = {How flocculation can explain coexistence in the chemostat},
   journal = {Journal of Biological Dynamics},
   volume = {2},
   number = {1},
   pages = {1-13},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1080/17513750801942537},

},

@article{Art76,
   author = {\underline{Haegeman}, B. and Weitz, J. S.},
   title = {A neutral theory of genome evolution and the frequency distribution of genes},
   journal = {BMC Genomics},
   volume = {13},
   number = {196},
   pages = {15 p.},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1186/1471-2164-13-196},
   UT_WOS = {WOS:000305791400001
PMID: 22613814},
   URL = {},
},

@article{Art77,
   author = {\underline{Haidar}, I. and Gerard, F. and \underline{\bf Rapaport}, A.},
   title = {Comparison of numerical simulations of reactive transport and chemostat-like models},
   journal = {Computational Ecology and Software},
   volume = {1},
   pages = {224-239},
   note = {},
   year = {2011},
   AERES = {ACL},
   URL = {},
},

@article{Art78,
   author = {\underline{Haidar}, I. and \underline{\bf Rapaport}, A. and Gerard, F.},
   title = {Effects of spatial structure and diffusion on the performances of the chemostat},
   journal = {Mathematical Biosciences and Engineering},
   volume = {8},
   pages = {953-971},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.3934/mbe.2011.8.953},
   URL = {},
},

@article{Art157,
   author = {Hangan, T. and Murea, C. and \underline{Sari}, T.},
   title = {Poleni curves on surfaces of constant curvature},
   note = {},
   journal = {Rend. Sem. Mat. Univ. Pol. Torino},
   volume = {67},
   pages = {59-76},
   year = {2009},
   AERES = {ACL},
   URL = {},
},

@article{Art79,
   author = {Harmand, J. and \underline{\bf Rapaport}, A. and Dochain, D. and \underline{Lobry}, C.},
   title = {Microbial ecology and bioprocess control : Opportunities and challenges},
   journal = {Journal of Process Control},
   volume = {18},
   number = {9},
   pages = {865-875},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1016/j.jprocont.2008.06.017},
   UT_WOS = { WOS:000260271800008},
   URL = {},
},

@article{Art85,
   author = {Jerry, M. and Raissi, N. and \underline{\bf Rapaport}, A.},
   title = {A viability analysis for an explicit inshore-offshore model},
   journal = {JP Journal of Applied Mathematics},
   volume = {1},
   number = {1},
   pages = {41-60},
   note = {},
   year = {2011},
   AERES = {ACL},
   URL = {},
},

@article{Art86,
   author = {Jerry, M. and \underline{\bf Rapaport}, A. and \underline{Cartigny}, P.},
   title = {Can protected areas potentially enlarge viability domains for harvesting management ?},
   journal = {Nonlinear Analysis : Real World Applications},
   volume = {11},
   number = {2},
   pages = {720-734},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1016/j.nonrwa.2009.01.042},
   UT_WOS = {WOS:000273101100011},
   URL = {},
},

@article{Art88,
   author = {Kislyuk, A. O. and \underline{Haegeman}, B. and Bergman, N. H. and Weitz, J. S.},
   title = {Genomic fluidity : an integrative view of gene diversity within microbial populations},
   journal = {BMC Genomics},
   volume = {12},
   number = {32},
   pages = {10 p.},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.1186/1471-2164-12-32},
   UT_WOS = {WOS:000286655900001},
   URL = {},
},

@article{Art91,
   author = {Lakrib, M. and \underline{Sari}, T.},
   title = {Time averaging for ordinary differential equations and retarded functional differential equations},
   journal = {Electronic Journal of Differential Equations},
   volume = {2010},
   number = {40},
   pages = {1-24},
   note = {},
   year = {2010},
   AERES = {ACL},
   UT_WOS = {WOS:000208198900001},
   URL = {},
},

@article{Art95,
   author = {\underline{Lobry}, C. and \underline{Sari}, T.},
   title = {Nonstandard analysis and representation of reality},
   journal = {International Journal of Control},
   volume = {81},
   number = {3},
   pages = {519-536},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1080/00207170701601728},

},

@article{Art96,
   author = {\underline{Lobry}, C. and \underline{Sari}, T.},
   title = {The peaking phenomenon and singular perturbations},
   journal = {ARIMA},
   volume = {9},
   number = {Spécial issue in honor of C. Lobry},
   pages = {487-516},
   note = {},
   year = {2008},
   AERES = {ACL},
   URL = {},
},


@article{Art101,
   author = {Mabrouk, N. and Deffuant, G. and Tolker, N. T. and \underline{Lobry}, C.},
   title = {Bacteria can form interconnected microcolonies when a self-excreted product reduces their surface motility: evidence from individual-based model simulations},
   journal = {Theory in Biosciences},
   volume = {129},
   number = {1},
   pages = {1-13},
   year = {2010},
   AERES = {ACL},
   UT_WOS = {WOS:000278527100001},
   URL = {},
},

@article{Art103,
   author = {Malisoff, M. and \underline{Mazenc}, F.},
   title = {Constructions of strict {L}yapunov functions for discrete time and hybrid time-varying systems},
   journal = {Nonlinear Analysis. Hybrid Systems},
   volume = {2},
   number = {2 spécial issue},
   pages = {394-407},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1016/j.nahs.2006.12.005},
   UT_WOS = {WOS:000208596600014},
},

@article{Art104,
   author = {Malisoff, M. and \underline{Mazenc}, F. and De Queiroz, M.},
   title = {Tracking and robustness analysis for controlled microelectromechanical relays},
   journal = {International Journal of Robust and Nonlinear Control},
   volume = {18},
   number = {18},
   pages = {1637-1656},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1002/rnc.1297},
   UT_WOS = {WOS:000261303400001},
   URL = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?\&GWVersion=2\&SrcAuth=INRA\&SrcApp=INRA\&DestLinkType=FullRecord\&DestApp=WOS\&KeyUT=000261303400001},
},

@article{Art105,
   author = {Martinet, V. and Thébaud, O. and \underline{\bf Rapaport}, A.},
   title = {Hare or tortoise? Trade-offs in recovering sustainable bioeconomic systems},
   journal = {Environmental Modeling and Assessment},
   volume = {15},
   number = {6},
   pages = {503-517},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1007/s10666-010-9226-2},
   UT_WOS = {WOS:000283368200005},
   URL = {},
},

@article{Art106,
   author = {\underline{Mazenc}, F.},
   title = {Discussions on : "Global output stability for systems described by retarded functional differential equations : {L}yapunov characterizations" and on : "Input-to-output stability for systems described by retarded functional differential equations"},
   journal = {European Journal of Control},
   volume = {14},
   number = {6},
   pages = {558-559},
   note = {},
   year = {2008},
   AERES = {ACL},
   UT_WOS = {WOS:000264258400010},
   URL = {},
},

@article{Art107,
   author = {\underline{Mazenc}, F. and Bernard, O.},
   title = {Asymptotically stable interval observers for planar systems with complex poles},
   journal = {IEEE Transactions on Automatic Control},
   volume = {55},
   number = {2},
   pages = {523-527},
   note = {},
   year = {2010},
   AERES = {ACL},
   UT_WOS = { WOS:000274383400029},
   URL = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?\&GWVersion=2\&SrcAuth=INRA\&SrcApp=INRA\&DestLinkType=FullRecord\&DestApp=WOS\&KeyUT=000274383400029},
},

@article{Art108,
   author = {\underline{Mazenc}, F. and De Queiroz, M. and Malisoff, M.},
   title = {Uniform global asymptotic stability of a class of adaptively controlled nonlinear systems},
   journal = {IEEE Transactions on Automatic Control},
   volume = {54},
   pages = {1152 - 1158},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1109/tac.2009.2013053},
   UT_WOS = {WOS:000266174100035},
   URL = {},
},

@article{Art109,
   author = {\underline{Mazenc}, F. and Malisoff, M.},
   title = {Strict {L}yapunov Function Constructions Under {L}a{S}alle Conditions with an Application to {L}otka-{V}olterra Systems},
   journal = {IEEE Transactions on Automatic Control},
   volume = {55},
   number = {4},
   pages = {841-854},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1109/tac.2010.2041995},
   UT_WOS = { WOS:000276251300003},
   URL = {},
},

@article{Art110,
   author = {\underline{Mazenc}, F. and Malisoff, M. and Bernard, O.},
   title = {A simplified design for strict {L}yapunov functions under {M}atrosov conditions},
   journal = {IEEE Transactions on Automatic Control},
   volume = {54},
   number = {1},
   pages = {177-183},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1109/tac.2008.2008353},
   UT_WOS = {WOS:000262817100018},
   URL = {},
},

@article{Art111,
   author = {\underline{Mazenc}, F. and Malisoff, M. and Harmand, J.},
   title = {Further results on stabilization of periodic trajectories for a chemostat with two species},
   journal = {IEEE Transactions on Automatic Control},
   volume = {53},
   number = {Spécial issue},
   pages = {66-74},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1109/tac.2007.911315},
   UT_WOS = { WOS:000253158000008},
   URL = {},
},

@article{Art112,
   author = {\underline{Mazenc}, F. and Malisoff, M. and Harmand, J.},
   title = {Further results on stabilization of periodic trajectories for a chemostat with two species},
   journal = {Ieee Transactions on Circuits and Systems I-Regular
   Papers (Special Issue)},
   volume = {},
   pages = {66-74},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1109/tac.2007.911315},
   UT_WOS = {WOS:000254021700008},
   URL = {},
},

@article{Art113,
   author = {\underline{Mazenc}, F. and Malisoff, M. and Harmand, J.},
   title = {Stabilization in a two-species chemostat with monod growth functions},
   journal = {IEEE Transactions on Automatic Control},
   volume = {54},
   number = {4},
   pages = {855-861},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1109/tac.2008.2010964},
   UT_WOS = {WOS:000265437700022},
   URL = {},
},

@article{Art114,
   author = {\underline{Mazenc}, F. and Malisoff, M. and Lin, Z.},
   title = {Further results on input-to-state stability for nonlinear systems with delayed feedbacks},
   journal = {Automatica},
   volume = {44},
   number = {9},
   pages = {2415-2421},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1016/j.automatica.2008.01.024},
   UT_WOS = {WOS:000259740200028},
   URL = {},
},

@article{Art115,
   author = {Mazouni, D. and Harmand, J. and \underline{\bf Rapaport}, A. and Hammouri, H.},
   title = {Optimal time switching control for multi-reaction batch process},
   journal = {Optimal Control, Applications and Methods},
   volume = {31},
   number = {4},
   pages = {289-301},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1002/oca.905},
   UT_WOS = { WOS:000280687600001},
   URL = {},
},

@article{Art121,
   author = {Piazza, A. and \underline{\bf Rapaport}, A.},
   title = {Optimal control of renewable resources with alternative use},
   journal = {Mathematical and Computer Modelling},
   volume = {50},
   number = {1-2},
   pages = {260-272},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1016/j.mcm.2008.12.009},
   UT_WOS = {WOS:000266506600029},
   URL = {},
},

@article{Art123,
   author = {Ranjard, L. and Dequiedt, S. and Jolivet, C. and Saby,
   N. and Thioulouse, J. and Harmand, J. and \underline{\bf Loisel},
   P. and \underline{\bf Rapaport}, A. and Fall, S. and Simonet, P. and Joffre, R. and Chemidlin, N. and Maron, P.-A. and Mougel, C. and Martin, M. and Toutain, B. and Arrouays, D. and Lemanceau, P.},
   title = {Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative},
   journal = {Agronomy for Sustainable Development},
   volume = {30},
   number = {2},
   pages = {359 - 365},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1051/agro/2009033},
   UT_WOS = {WOS:000276769800010},
   URL = {},
},

@article{Art124,
   author = {\underline{\bf Rapaport}, A.},
   title = {Biophysique : le sol est-il un bioréacteur?},
   journal = {Lettre d'Informations Inra},
   volume = {Inra - Actualité Chercheurs, étudiant, La Modélisation Est Partout},   note = {},
   year = {2013},
   AERES = {ASCL},
   URL = {},
},

@article{Art125,
   author = {\underline{\bf Rapaport}, A. and Dochain, D.},
   title = {Minimal time control of fed-batch processes with growth functions having several maxima},
   journal = {IEEE Transactions on Automatic Control},
   volume = {56},
   pages = {2671-2676},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.1109/tac.2011.2159424},
   URL = {},
},

@article{Art126,
   author = {\underline{\bf Rapaport}, A. and Dochain, D. and Harmand, J.},
   title = {Practical coexistence in the chemostat with arbitrarily close growth functions},
   journal = {ARIMA},
   volume = {9},
   pages = {231-243},
   note = {},
   year = {2008},
   AERES = {ACL},
   URL = {},
},

@article{Art127,
   author = {\underline{\bf Rapaport}, A. and Dochain, D. and Harmand, J.},
   title = {Long run coexistence in the chemostat with multiple species},
   journal = {Journal of Theoretical Biology},
   volume = {257},
   number = {2},
   pages = {252-259},
   note = {},
   year = {2009},
   AERES = {ACL},
   DOI = {10.1016/j.jtbi.2008.11.015},
   UT_WOS = {WOS:000264258500006},
   URL = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?\&GWVersion=2\&SrcAuth=INRA\&SrcApp=INRA\&DestLinkType=FullRecord\&DestApp=WOS\&KeyUT=000264258500006},
},

@article{Art128,
   author = {\underline{\bf Rapaport}, A. and Harmand, J.},
   title = {Biological control of the chemostat with nonmonotonic response and different removal rates},
   journal = {Mathematical Biosciences and Engineering},
   volume = {5},
   number = {3},
   pages = {539-547},
   note = {},
   year = {2008},
   AERES = {ACL},
   UT_WOS = {WOS:000257293100009},
   URL = {http://www.ncbi.nlm.nih.gov/pubmed?term=18616357},
},

@article{Art129,
   author = {\underline{\bf Rapaport}, A. and Harmand, J. and \underline{Mazenc}, F.},
   title = {Coexistence in the design of a series of two chemostats},
   journal = {Nonlinear Analysis : Real World Applications},
   volume = {9},
   number = {3},
   pages = {1052-1067},
   note = {},
   year = {2008},
   AERES = {ACL},
   DOI = {10.1016/j.nonrwa.2007.02.003},
   UT_WOS = {WOS:000254368500026},
   URL = {},
},

@article{Art132,
   author = {Rouyer, J. and \underline{Sari}, T.},
   title = {As many antipodes as vertices on some convex polyhedra},
   journal = {Advances in Geometry},
   volume = {12},
   number = {1},
   pages = {43-61},
   note = {},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1515/advgeom.2011.030},
   UT_WOS = {WOS:000300857300004},
   URL = {},
},

@article{Art133,
   author = {\underline{Sari}, T.},
   title = {Comments on  Limit cycles in the chemostat with constant yields , Mathematical and Computer Modelling 45 (2007) 927-932},
   journal = {Mathematical and Computer Modelling},
   volume = {52},
   number = {9-10},
   pages = {1822-1824},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1016/j.mcm.2010.07.010},
   UT_WOS = {WOS:000281354400044},
   URL = {},
},

@article{Art134,
   author = {\underline{Sari}, T.},
   title = {A {L}yapunov function for the chemostat with variable yields},
   journal = {Comptes Rendus Mathématique},
   volume = {348},
   number = {13-14},
   pages = {747-751},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1016/j.crma.2010.06.008},
   UT_WOS = {WOS:000280671400011},
   URL = {},
},

@article{Art135,
   author = {\underline{Sari}, T. and \underline{El Hajji}, M. and Harmand, J.},
   title = {The mathematical analysis of a syntrophic relationship between two microbial species in a chemostat},
   journal = {Mathematical Biosciences and Engineering},
   volume = {9},
   number = {3},
   pages = {627-645},
   note = {},
   year = {2012},
   AERES = {ACL},
   DOI = {10.3934/mbe.2012.9.627},
   UT_WOS = {WOS:000307828300008},
   URL = {},
},

@article{Art136,
   author = {\underline{Sari}, T. and \underline{Mazenc}, F.},
   title = {Global dynamics of the chemostat with different removal rates and variable yields},
   journal = {Mathematical Biosciences and Engineering},
   volume = {8},
   number = {3},
   pages = {827 840},
   note = {},
   year = {2011},
   AERES = {ACL},
   DOI = {10.3934/mbe.2011.8.827},
   UT_WOS = {WOS:000293623800012},
   URL = {http://www.ncbi.nlm.nih.gov/pubmed?term=21675813},
},

@article{Art137,
   author = {Sieber, J. and \underline{\bf Rapaport}, A. and Rodrigues, S. and Desroches, M.},
   title = {A method for the reconstruction of unkwnown non-monotonic growth functions in the chemostat},
   journal = {Bioprocess and Biosystems Engineering},
   note = {},
   year = {2013},
   AERES = {ACL},
   DOI = {10.1007/s00449-013-0912-8},
},
		 
		 
@article{Art141,
   author = {Van Groenendael, J. and Mony, C. and Garbey, M. and
   \underline{\bf Campillo}, F. and El Hamidi, A.},
   title = {Introduction to the special issue of {E}cological {M}odelling "{M}odelling clonal plant growth: from ecological concepts to mathematics"},
   journal = {Ecological Modelling},
   volume = {234},
   pages = {1--2},
   year = {2012},
   AERES = {ACL},
   DOI = {10.1016/j.ecolmodel.2012.03.013},
   UT_WOS = {WOS:000304636500001},
   URL = {http://www.sciencedirect.com/science/article/pii/S0304380012001202},
},

@article{Art142,
   author = {Vanpeteghem, D. and \underline{Haegeman}, B.},
   title = {An analytical approach to spatio-temporal dynamics of neutral community models},
   journal = {Journal of Mathematical Biology},
   volume = {61},
   number = {3},
   pages = {323-357},
   note = {},
   year = {2010},
   AERES = {ACL},
   DOI = {10.1007/s00285-009-0303-6},
   UT_WOS = {WOS:000279085400001},
   URL = {},
},

@article{Art159,
   author = {\underline{Bayen}, T. and Mairet, F.},
   title = {Minimal time control of fed-batch bioreactor with product inhibition},
   journal = {Bioprocess and Biosystems Engineering},
   note = {},
   year = {2013},
   AERES = {ACL},
   DOI = {10.1007/s00449-013-0911-9},
},

		 
@article{Art160,
   author = {\underline{Haegeman}, B. and Hamelin, J. and Moriarty, J.
   and Neal, P. and Dushoff, J. and Weitz, J. S.},
   title = {Robust estimation of microbial diversity in theory and in practice},
   journal = {The ISME Journal},
   pages={1--10},
   year = {2013},
   AERES = {ACL},
},


@article{Art161,
   author = {Montseny, E. and \underline{\bf Casenave}, C.},
   title = {Analysis, simulation and impedance operator of a nonlocal model
of porous medium for acoustic control.},
   journal = {Journal of Vibration and Control},
   year = {2013},
   AERES = {ACL In Press},
},
		 
@article{Art162,
   author = {\underline{Haegeman}, B. and \underline{Sari}, T. and Etienne, R. },
   title = {Predicting coexistence of plants subject to a tolerance-competition
trade-off},
   journal = {J. Math. Biol},
   year = {2013},
   AERES = {ACL In Press},
},		 
		 
@article{Art163,
   author = {\underline{Bouhafs}, W. and Abdellatif, N. and Jean, F.
   and Harmand, J.},
   title = {Commande optimale en temps minimal d’un procédé biologique
      d’épuration de l’eau},
   journal = {ARIMA},
   year = {2013},
   AERES = {ACL In Press},
},
		 
@article{Art164,
   author = {\underline{Sari}, T.},
   title = {Competitive Exclusion for Chemostat Equations with Variable Yields},
   journal = {Acta Applicandae Mathematicae},
   volume={123},
   pages={201--219},
   year = {2013},
   AERES = {ACL},
},
		 
@article{Art165,
   author = {\underline{Charfi}, A. and Benamar, N. and Harmand, J.},
   title = {Analysis of fouling mechanisms in anaerobic membrane bioreactors},
   journal = {Water Research},
   volume={46},
   pages={2637-2650},
   year = {2012},
   AERES = {ACL},
},
		 
@article{Art166,
   author = {\underline{Kekih Salem}, R. and Abdellatif, N. and \underline{Sari},
   T. and Harmand, J.},
   title = {Analyse mathématique d’un modèle de digestion anaérobie à trois étapes},
   journal = {ARIMA},
   year = {2013},
   AERES = {ACL In Press},
},		 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
%% actes de conférence et communications orales
		 
%% C-ACTI
%% C-ACTN
%% C-COM
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@inproceedings{Proc8,
   author = {Bello Rivas, J. M. and Harmand, J. and Ivorra, B. and Ramos del Olmo, A. M. and \underline{\bf Rapaport}, A.},
   title = {Bioreactor shape optimisation. Modeling, simulation, and shape optimization of a simple bioreactor for water treatment},
   booktitle = {7ème STIC \& Environnement 2011},
   publisher = {Transvalor - Presses des Mines},
   pages = {344},
   note = {},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc9,
   author = {\underline{Benyahia}, B. and \underline{Sari}, T. and Cherki, B. and Harmand, J.},
   title = {Equilibria of an anaerobic wastewater treatment process and their stability},
   booktitle = {11th International Symposium on Computer Applications in Biotechnology (CAB 2010)},
   editor = {Julio, R. Banga and P., Bogaerts and Jan Van, Impe and D., Dochain and Ilse, Smets},
   publisher = {International Federation of Automatic Control},
   pages = {371-376},
   note = {},
   year = {2010},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc10,
   author = {\underline{Benyahia}, B. and \underline{Sari}, T. and Cherki, B. and Harmand, J.},
   title = {Sur le modèle {AM2} de digestion anaérobie},
   booktitle = {CARI'10 Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées},
   pages = {453--460},
   note = {},
   year = {2010},
   AERES = {C-ACTI},
   URL = {http://www.cari-info.org/arch_actes_cari2010.htm},
},

@inproceedings{Proc11,
   author = {\underline{Benyahia}, B. and \underline{Sari}, T. and Cherki, B. and Harmand, J.},
   title = {Modélisation mathématique d'un bioréacteur membranaire anaérobie},
   booktitle = {5ème Colloque sur les Tendances dans les Applications Mathématiques en Tunisie, Algérie, Maroc},
   series = {TAMTAM'11 },
   pages = {465-470},
   note = {},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc12,
   author = {\underline{Benyahia}, B. and \underline{Sari}, T. and Harmand, J. and Cherki , B.},
   title = {Modeling of the Soluble Microbial Products ({SMP}) in Anaerobic Membrane BioReactors ({AMBR}) : Equilibria and stability of the {AM2b} model},
   booktitle = {18th IFAC World Congress, Milano (Italy), August 28 - September 2},
   series = {World Congress},
   publisher = {IFAC},
   pages = {3789-3794},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc17,
   author = {\underline{\bf Campillo}, F. and Champagnat, N.},
   title = {Simulation and Analysis of a Markovian Individual-Based Model for Clonal Plant Dynamics},
   booktitle = {7th International Congress on Industrial and Applied Mathematics (ICIAM 2011)},
   note = {},
   year = {2011},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc18,
   author = {\underline{\bf Campillo}, F. and Champagnat, N. and Mony, C.},
   title = {Monte {C}arlo simulation and mathematical analysis of an individual-based model for clonal plant dynamics},
   booktitle = {54. Symposium of the International Association for Vegetation Science (IAVS 2011)},
   note = {},
   year = {2011},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc19,
   author = {\underline{\bf Campillo}, F. and Desassis, N.},
   title = {Stochastic spatio-temporal modeling of forest dynamics},
   booktitle = {24th International Biometric Conference},
   note = {},
   year = {2008},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc20,
   author = {\underline{\bf Campillo}, F. and Desassis, N. and Rossi, V.},
   title = {Individual-based Modelling of Spatio-temporal of Forest Dynamics},
   booktitle = {Joint Meeting of the Statistical Society of Canada and the Société Française de Statistique},
   note = {},
   year = {2008},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc21,
   author = {\underline{\bf Campillo}, F. and Desassis, N. and Rossi, V.},
   title = {Modélisation spatialement explicite d'une dynamique forestière et inférence},
   booktitle = {Journées MAS de la SMAI (Modélisation et statistiques des réseaux) 2008},
   note = {},
   year = {2008},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc22,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M.},
   title = {A Markovian individual-based model for terrestrial plant dynamics},
   booktitle = {3. International Conference on Approximation Methods and Numerical Modelling in Environment and Natural Resources},
   series = {MAMERN'09},
   pages = {62-65},
   note = {},
   year = {2009},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc23,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M.},
   title = {Modèles logistiques déterministes et stochastiques},
   booktitle = {CARI'10},
   series = {},
   pages = {110-118},
   year = {2010},
   AERES = {C-ACTI},
   URL = {},
},
		 
		 
@inproceedings{Proc24,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M. and Larramendy-Valverde, I.},
   title = {Stochastic models for the chemostat},
   booktitle = {MAMERN11: 4th International Conference on
   Approximation Methods and Numerical Modelling in Environment and
   Natural Resources Saidia (Morocco) May 23-26},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},
		 

@inproceedings{Proc25,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M. and Larramendy-Valverde, I.},
   title = {Stochastic models for the chemostat},
   booktitle = {7th International Congress on Industrial and Applied Mathematics (ICIAM) 2011},
   note = {},
   year = {2011},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc26,
   author = {\underline{\bf Campillo}, F. and \underline{Raherinirina}, Angelo and Rakotozafy, R.},
   title = {Un modèle markovien de transition agraire},
   booktitle = {9. Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées (CARI)},
   pages = {101-108},
   note = {},
   year = {2008},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc27,
   author = {\underline{\bf Campillo}, F. and Rakotozafy, R. and Rossi, V.},
   title = {Computational probability modeling and Bayesian inference},
   booktitle = {International Conference in Honor of C. Lobry},
   note = {},
   year = {2008},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc28,
   author = {\underline{\bf Casenave}, C. and Dochain, D. and Alvarez, G.  and Arellano, M. and Benkhelifa, H. and Leducq, D. },
   title = {Control of a nonlinear ice cream crystallization process},
   booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS) },
   note = {},
   year = {2013},
   AERES = {C-ACTI},

},

@inproceedings{Proc29,
   author = {\underline{\bf Casenave}, C. and Dochain, D. and Alvarez, Graciela and Benkhelifa, Hayat and Flick, D. and Leducq, D.},
   title = {Steady-state and stability analysis of a population balance based nonlinear ice cream crystallization model},
   booktitle = {2012 ACC : American Control Conference},
   pages = {6 p.},
   year = {2012},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc31,
   author = {Chemidlin, N. and Dequiedt, S. and Doyen, R. and Lelievre, M. and Jolivet, C. and Martin, M. and Saby, N. and Toutain, B. and Arrouays, D. and Harmand, J. and \underline{\bf Loisel}, P.and Thioulouse, J. and Maron, P.-A. and Lemanceau, P. and Ranjard, L.},
   title = {Distribution et déterminisme de la diversité des communautés de champignons telluriques à l'échelle de trois régions françaises},
   booktitle = {4. Colloque de l'Association Francophone d'Ecologie Microbienne},
   series = {4ème Colloque de l'Association Francophone d'Ecologie Microbienne : le livre des résumés },
   pages = {p. 91},
   year = {2009},
   AERES = {C-ACTN},

},

@inproceedings{Proc37,
   author = {Dequiedt, S. and Lelievre, M. and Jolivet, C. and Arrouays, D. and Saby, N. and Thioulouse, J. and Harmand, J. and \underline{\bf Loisel}, P.and Maron, P.-A. and Ranjard, L.},
   title = {Ecomic - RMQs : Cartographie de la diversité microbienne des sols àl'échelle de la France},
   booktitle = {4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM)},
   pages = {},
   note = {1 p.},
   year = {2009},
   AERES = {C-AFF},

},

@inproceedings{Proc38,
   author = {Dequiedt, S. and Lelievre, M. and Jolivet, C. and Martin, M. and Saby, N. and Arrouays, D. and Harmand, J. and \underline{\bf Loisel}, P.and Thioulouse, J. and Lemanceau, P. and Ranjard, L.},
   title = {Diversité des communautés microbiennes telluriques à l'échelle du territoire national},
   booktitle = {Journées d'Etude des Sols},
   series = {Actes des 10èmes JES (Journées d'Etudes des Sols) },
   pages = {151-152},
   note = {},
   year = {2009},
   AERES = {C-ACTN},

},

@inproceedings{Proc39,
   author = {Dequiedt, S. and Lelievre, M. and Jolivet, C. and Martin, M. and Saby, N. and Toutain, B. and Arrouays, D. and Chemidlin, N. and Harmand, J. and \underline{\bf Loisel}, P.and Thioulouse, J. and Maron, P.-A. and Lemanceau, P. and Ranjard, L.},
   title = {Patterns biogéographiques de la diversité bactérienne des sols à l'échelle du territoire national},
   booktitle = {Congrès AFEM (Association Francophone pour l'Ecologie Microbienne)},
   year = {2009},
   AERES = {C-COM},

},

@inproceedings{Proc42,
   author = {\underline{Deygout}, C. and Lesne, A. and \underline{\bf Campillo}, F. and \underline{\bf Rapaport}, A },
   title = {Une approche originale pour la modélisation des biofilms, ou un aller-retour entre {IBM} et {EDO}},
   booktitle = {Colloque Ecologie, Montpellier},
   note = {},
   year = {2010},
   AERES = {C-COM},

},

@inproceedings{Proc43,
   author = {Diagne, M. L. and N'diaye, P. I. and \underline{Sari}, T. and Niane, M. T.},
   title = {Un modèle mathématique de la prolifération du {T}ypha},
   booktitle = {10ème Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées (CARI'10), E. Badouel, A. Sbihi and I. Lokpo (Editors), INRIA},
   pages = {277-284},
   note = {},
   year = {2010},
   AERES = {C-ACTI},
   URL = {http://www.cari-info.org/arch_actes_cari2010.htm},
},

@inproceedings{Misc13,
   author = {Dochain, D. and De Leenheer, P. and
   \underline{\bf Rapaport}, A.},
   booktitle={Mathmod 2012 : 7. Vienna conference on mathematical modelling},
   title = {About transgressive over-yielding in the chemostat},
   pages = {12 p.},
   year = {2012},
   AERES = {C-ACTI},

},

@inproceedings{Proc44,
   author = {Dumont, M. and \underline{\bf Rapaport}, A. and \underline{Benyahia}, B. and Godon, J.-J. and Harmand, J.},
   title = {Automatic control may help to investigate microbial ecological questions},
   booktitle = {International symposium on biotechnology (ISB 2008)},
   pages = {OC34 S2},
   note = {},
   year = {2008},
   AERES = {C-ACTI},

},

@inproceedings{Proc45,
   author = {Dumont, M. and \underline{\bf Rapaport}, A. and Harmand, J. and \underline{Benyahia}, B. and Godon, J.-J.},
   title = {Observers for microbial ecology - How including molecular data into bioprocess modeling ?},
   booktitle = {16. Mediterranean Conference on Control and Automation},
   series = {2008 Mediterranean Conference on Control Automation},
   publisher = {IEEE Press},
   volume = {1-4},
   pages = {221-226},
   note = {},
   year = {2008},
   AERES = {C-ACTI},
   UT_WOS = {WOS:000261534400037},
   URL = {},
},

@inproceedings{Proc46,
   author = {\underline{El Hajji}, M. and Ranjard, L. and Maron, P.-A. and Nowak, V. and Harmand, J. and \underline{\bf Rapaport}, A.},
   title = {Mathematical modeling of soil strains growth at batch culture},
   booktitle = {4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM)},
   pages = {},
   note = {1 p.},
   year = {2009},
   AERES = {C-AFF},

},

@inproceedings{Proc47,
   author = {\underline{El Hajji}, M. and Ranjard, L. and \underline{\bf Rapaport}, A. and Maron, P.-A. and Harmand, J.},
   title = {How optical density measurements on artificially reconstituted soil ecosystems show the validity of the competitive exclusion principle},
   booktitle = {3th Conférence Internationale de la SFBT},
   pages = {},
   note = {},
   year = {2010},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc48,
   author = {\underline{El Hajji}, M. and \underline{\bf Rapaport}, A.},
   title = {Reversible inhibition excluses the coexistence at continuous culture},
   booktitle = {3th Conférence Internationale de la SFBT},
   pages = {n.p.},
   year = {2010},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc49,
   author = {\underline{El Hajji}, M. and \underline{Sari}, T. and Harmand, J.},
   title = {Analyse d'une relation syntrophique : cas d'un chemostat},
   booktitle = {5ème Colloque sur les Tendances dans les Applications Mathématiques en Tunisie, Algérie, Maroc},
   series = {TAMTAM'11},
   pages = {451-456},
   note = {},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc51,
   author = {\underline{Kekih Salem}, R. and Abdellatif, N. and \underline{Sari}, T. and Harmand, J.},
   title = {Sur un modèle de digestion anaréobie avec dégradation enzymatique du substart sous forme solide},
   booktitle = {5ème Colloque sur les Tendances dans les Applications Mathématiques en Tunisie, Algérie, Maroc},
   pages = {457-463},
   note = {},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc52,
   author = {\underline{Kekih Salem}, R. and Abdellatif, N. and \underline{Sari}, T. and Harmand, J.},
   title = {On a three steps model of anaerobic digestion including the hydrolysis of particulate matter},
   booktitle = {Mathmod 2012 : 7. Vienna conference on mathematical modelling},
   series = {Minisymposia Mathematical modelling and control fo bio-chemical processes},
   pages = {671--676},
   year = {2012},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc53,
   author = {\underline{Kekih Salem}, R. and \underline{Sari}, T. and Abdellatif, N.},
   title = {Sur un modèle de compétition et de coexistence dans le chemostat},
   booktitle = {10th Colloque Africain sur la Recherche en
   Informatique et en Mathématiques Appliquées (CARI'10), E. Badouel,
   A. Sbihi and I. Lokpo (Editors), INRIA},
   pages = {437--444}, 
   note = {},
   year = {2010},
   AERES = {C-ACTI},
   URL = {http://intranet.inria.fr/international/arima/014/014002.html},
},

@inproceedings{Proc54,
   author = {\underline{Kekih Salem}, R. and \underline{Sari}, T. and \underline{\bf Rapaport}, A.},
   title = {La floculation et la coexistence dans le chemostat},
   booktitle = {5ème Colloque sur les Tendances dans les Applications Mathématiques en Tunisie, Algérie, Maroc},
   pages = {477-483},
   note = {},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Draft6,
   author = {Brighi, B. and Fruchard, A. and \underline{Sari}, T.},
   title = {The {B}lasius equation},
   note = {},
   booktitle = {Colloque à la mémoire de E. Isambert, Philosophie,
   méthodologie et applications de l'analyse non standard, U. Paris 13},
   year = {2010},
   pages = {105--123},
   AERES = {C-ACTN},
   URL = {},
},

@inproceedings{Misc15,
   author = {Gajardo, P. and Harmand, J. and Ramirez, H.
   and \underline{\bf Rapaport}, A.},
   booktitle = {STIC \& Environnement (Calais)},
   title = {About biological treatment of water resources in minimal time},
   pages = {},
   note = {14 p.},
   year = {2009},
   AERES = {C-ACTI},

},

@inproceedings{Proc55,
   author = {Gajardo, P. and Ramirez, H. and Riquelme, V. and \underline{\bf Rapaport}, A.},
   title = {Bioremediation of natural water resources via optimal control techniques},
   booktitle = {BIOMAT, International Symposium on Mathematical and
   Computational Biology, Santiago de Chile},
   note = {},
   year = {2011},
   AERES = {C-COM},

},

@inproceedings{Proc69,
   author = {Harmand, J. and \underline{\bf Rapaport}, A. and Dochain, D. and Godon, J.-J.},
   title = {Observers for the estimation of functional groups of the anaerobic digestion},
   booktitle = {MATHMOD VIENNA 09 - 6. Vienne Conference on Mathematical Modelling},
   series = {ARGESIM-Report },
   publisher = {ARGESIM / ASIM},
   volume = {35},
   pages = {1576-1581},
   note = {},
   year = {2009},
   AERES = {C-ACTI},

},

@inproceedings{Proc70,
   author = {Harmand, J. and \underline{\bf Rapaport}, A. and \underline{El Hajji}, M. },
   title = {The growth of soil bacteria revisited},
   booktitle = {First Franco-Chilean Workshop on Bioprocess Modeling},
   note = {},
   year = {2010},
   AERES = {C-COM},

},

@inproceedings{Proc77,
   author = {\underline{Lobry}, C. and \underline{\bf Rapaport}, A. and \underline{Sari}, T.},
   title = {Stability loss delay in the chemostat with a slowly varying washout rate},
   booktitle = {6. Vienna International Conference on Mathematical Modelling},
   series = {Proceedings MATHMOD 09, ARGESIM },
   publisher = {AGESIM/ASIM},
   volume = {35},
   pages = {1582-1586},
   note = {},
   year = {2009},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc79,
   author = {\underline{Lobry}, C. and \underline{Sari}, T.},
   title = {La modélisation de la persistance en écologie},
   booktitle = {Colloque à la mémoire de E. Isambert, Philosophie,
   méthodologie et applications de l'analyse non standard, U. Paris 13},
   pages = {163-184},
   note = {},
   year = {2012},
   AERES = {C-ACTN},

},
		 
@inproceedings{Proc86,
   author = {Malisoff, M. and \underline{Mazenc}, F.},
   title = {Constructions of strict {L}yapunov functions for discrete time and hybrid time-varying systems},
   booktitle = {Proceedings of the international conference on hybrid systems and applications},
   note = {},
   year = {2008},
   AERES = {C-ACTI},

},

@inproceedings{Proc87,
   author = {Malisoff, M. and \underline{Mazenc}, F. and De Queiroz, M.},
   title = {Remarks on tracking and robustness analysis for MEM relays},
   booktitle = {American Control Conference 2008 : ACC 08},
   series = {Proceedings of the American Control Conference },
   publisher = {IEEE Press},
   volume = {1-12},
   pages = {2945-2950},
   note = {},
   year = {2008},
   AERES = {C-ACTI},
   UT_WOS = {WOS:000259261502053},
   URL = {http://www.a2c2.org/conferences/acc2008/},
},

@inproceedings{Proc88,
   author = {\underline{Mazenc}, F. and Bernard, O.},
   title = {Asymptotically stable interval observers for planar systems with complex poles},
   booktitle = {ECC'09: European control conference},
   note = {},
   year = {2009},
   AERES = {C-ACTI},
   UT_WOS = {WOS:000274383400029},
   URL = {http://gateway.isiknowledge.com/gateway/Gateway.cgi?\&GWVersion=2\&SrcAuth=INRA\&SrcApp=INRA\&DestLinkType=FullRecord\&DestApp=WOS\&KeyUT=000274383400029},
},

@inproceedings{Proc89,
   author = {\underline{Mazenc}, F. and De Queiroz, M. and Malisoff, M.},
   title = {Uniform global asymptotic stability of adaptively controlled nonlinear systems via strict {L}yapunov functions},
   booktitle = {1. Annual Dynamic Systems and Control Conference (DSCC 2008)},
   series = {ASME 2008 Dynamic Systems and Control Conference (DSCC 2008)},
   publisher = {ASME - American Association of Mechanical Engineers},
   pages = {471-476},
   note = {},
   year = {2008},
   AERES = {C-ACTI},
   UT_WOS = {WOS:000266709500010},
   URL = {},
},

@inproceedings{Proc90,
   author = {\underline{Mazenc}, F. and Kim, Peter S. and Niculescu, S.},
   title = {Stability of a Gleevec and immune model with delays},
   booktitle = {47. IEEE Conference on decision and control},
   series = {Proceedings of the IEEE Conference on Decision \& Control, including the Symposium on Adaptive Processes},
   publisher = {IEEE Press},
   pages = {3317-3322},
   note = {},
   year = {2008},
   AERES = {C-ACTI},
   UT_WOS = {WOS:000307311603074},
   URL = {},
},

@inproceedings{Proc91,
   author = {\underline{Mazenc}, F. and Malisoff, M.},
   title = {{L}yapunov Functions under {L}a{S}alle Conditions with an Application to {L}otka-{V}olterra Systems},
   booktitle = {American Control Conference 2009},
   series = {ACC '09. Proceedings of the American Control Conference},
   publisher = {IEEE Press},
   volume = {1-9},
   pages = {96-101},
   note = {},
   year = {2009},
   AERES = {C-ACTI},
   UT_WOS = {WOS:000270044900015},
   URL = {},
},

@inproceedings{Proc92,
   author = {\underline{Mazenc}, F. and Malisoff, M. and Bernard, O.},
   title = {{L}yapunov functions and robustness analysis under {M}atrosov conditions with an application to biological systems},
   booktitle = {American Control Conference 2008 : ACC 2008},
   series = {Proceedings of the American Control Conference 2008 },
   publisher = {IEEE Press},
   volume = {1-12},
   pages = {2933 - 2938},
   note = {},
   year = {2008},
   AERES = {C-ACTI},
   UT_WOS = {WOS:000259261502051},
   URL = {http://www.a2c2.org/conferences/acc2008/},
},

@inproceedings{Proc97,
   author = {\underline{\bf Rapaport}, A.},
   title = {Review of Recent Results on Scalar Calculus of Variations
   Problems in Infinite Horizon.},
   booktitle = { International Conference on Differential Equations and Topology dedicated to the Centennial Anniversary of L. S. Pontryagin},
   note = {},
   year = {2008},
   AERES = {C-COM},

},

@inproceedings{Proc98,
   author = {\underline{\bf Rapaport}, A.},
   title = {Quelques {EDP} en modélisation, commande et conception d'écosystèmes microbiens et bioprocédés},
   booktitle = {Séminaire de l'Equipe ACSIOM Programme 2010 - 2011},
   year = {2011},
   AERES = {C-COM},

},

@inproceedings{Proc99,
   author = {\underline{\bf Rapaport}, A.},
   title = {Singular arcs issues in minimal time problems for some fed-batch processes},
   booktitle = {Workshop on Applied and Numerical Optimal Control
   (ANOC), Paris},
   note = {},
   year = {2012},
   AERES = {C-COM},

},

@inproceedings{Proc100,
   author = {\underline{\bf Rapaport}, A.},
   title = {A propos de commande de systèmes dynamiques vers un extremum d'une fonction de sortie mal connue et applications},
   booktitle = {Séminaire Avignon-Montpellier d'Optimisation, Contrôle et Dynamique (SAMOCOD)},
   note = {},
   year = {2013},
   AERES = {C-COM},

},

@inproceedings{Proc101,
   author = {\underline{\bf Rapaport}, A.},
   title = {Some Control and Optimization Problems for the Biological Wastewater treatment},
   booktitle = {GDRE ConEDP Meeting 2013 :  Modeling and control of systems: applications to nano-sciences, environment and energy },
   note = {},
   year = {2013},
   AERES = {C-COM},

},

@inproceedings{Proc102,
   author = {\underline{\bf Rapaport}, A. and Dochain, D.},
   title = {Minimal time control of fed-batch processes with growth functions having several maxima},
   booktitle = {11. CAB 2010 : IFAC International Symposium on Computer Applications in Biotechnology},
   pages = {6 p.},
   note = {},
   year = {2010},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc103,
   author = {\underline{\bf Rapaport}, A. and Dochain, D. },
   title = {Minimal time control of fed-batch processes for growth functions having several maxima},
   booktitle = {Latin American Workshop on Optimization and Control},
   note = {},
   year = {2012},
   AERES = {C-COM},

},

@inproceedings{Proc104,
   author = {\underline{\bf Rapaport}, A. and Dochain, D. and Harmand, J.},
   title = {Practical coexistence in the chemostat with arbitrarily close growth functions},
   booktitle = {International Conference in Honor of C. Lobry},
   note = {},
   year = {2008},
   AERES = {C-COM},
   URL = {},
},

@inproceedings{Proc105,
   author = {\underline{\bf Rapaport}, A. and Dochain, D. and Harmand, J. and Acuna, G.},
   title = {Unknown input observers for biological processes},
   booktitle = {17. IFAC World Congress 2008},
   series = {Proceedings of the 17th IFAC World Congress },
   pages = {5 p.},
   note = {},
   year = {2008},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc106,
   author = {\underline{\bf Rapaport}, A. and \underline{El Hajji}, M.},
   title = {Design of a Cascade Observer for a Model of Bacterial Batch Culture with Nutrient Recycling},
   booktitle = {11. CAB 2010 : IFAC International Symposium on Computer Applications in Biotechnology},
   series = {Computer Applications in Biotechnology},
   pages = {6 p.},
   note = {},
   year = {2010},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc107,
   author = {\underline{\bf Rapaport}, A. and \underline{El Hajji}, M. and Harmand, J.},
   title = {Design of a cascade observer for a model of bacterial batch culture with nutrient recycling},
   booktitle = {First Franco-Chilean Workshop on Bioprocess Modeling },
   note = {},
   year = {2010},
   AERES = {C-COM},

},

@inproceedings{Proc108,
   author = {\underline{\bf Rapaport}, A. and Harmand, J. and Godon, J.-J.},
   title = {Comment la diversité permet une coexistence pratique d'espèces en compétition sur un substrat en accord avec le principe d'exclusion compétitive?},
   booktitle = {Colloque Ecologie, Montpellier},
   note = {},
   year = {2010},
   AERES = {C-COM},

},

@inproceedings{Proc110,
   author = {\underline{Saddoud}, A. and \underline{Sari}, T. and \underline{\bf Rapaport}, A. and Lortie, R. and Harmand, J. and Dubreucq, E.},
   title = {A Mathematical Study of an Enzymatic Reaction in Non Homogeneous Reactors with Substrate and Product Inhibition: Application to Cellobiose Hydrolysis in a Bioreactor with a Dead-Zone},
   booktitle = {11. CAB 2010 : IFAC International Symposium on Computer Applications in Biotechnology},
   series = {Computer Applications in Biotechnology },
   pages = {6 p.},
   note = {},
   year = {2010},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc111,
   author = {\underline{Sari}, T.},
   title = {Extension of the Chemostat model with flocculation},
   booktitle = {3th Latin American Workshop on Optimization and Control (LAWOC2012)},
   note = {},
   year = {2012},
   AERES = {C-COM},

},

@inproceedings{Proc112,
   author = {\underline{Sari}, T. and Abdellatif, N. and \underline{Benyahia}, B. and Diagne,
   M. L. and \underline{El Hajji}, M. and \underline{Kekih Salem}, R.},
   title = {Modélisation mathématique en biologie : compétition, coexistence et croissance},
   booktitle = {5ème Colloque sur les Tendances dans les Applications Mathématiques en Tunisie, Algérie, Maroc},
   pages = {19-25},
   note = {},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},

@inproceedings{Proc114,
   author = {Sieber, J. and \underline{\bf Rapaport}, A. and Rodrigues, S. and Desroches, M. },
   title = {A new method for the reconstruction of unknown non-monotonic growth function in the chemostat},
   booktitle = {20th IEEE Mediterranean Conference on Control and Automation (MED '12) },
   editor = {IEEE},
   series = {IEEE Xplore},
   pages = {169--175},
   year = {2012},
   AERES = {C-ACTI},
},

@inproceedings{Proc122,
   author = {\underline{Kekih Salem}, R. and Abdellatif, N. and \underline{Sari},
   T. and Harmand J.},
   title = {Analyse mathématique d'un modèle de digestion anaérobie à trois étapes},
   booktitle = {CARI'12, Proceedings of the 11th African Conference
   on Research in Computer Science and Applied Mathematics, Algeria},
   note = {},
   pages={459--466},
   year = {2012},
   AERES = {C-ACTI},
   URL = {},
},
		 
@inproceedings{Proc123,
   author = {\underline{Kekih Salem}, R. and Abdellatif, N. and \underline{Sari},
   T. and Harmand J.},
   title = {Qualitative properties of 3-steps model of anaerobic digestion including hydrolysis of particulate matter},
   booktitle = {International Joint Conference CB-WR-MED Conference/
   2nd AOP' Tunisia Conference for Sustainable Water Management. Tunis},
   note = {},
   pages={93--94},
   year = {2013},
   AERES = {C-COM},
   URL = {},
},
		 
		 
		 
@inproceedings{Proc124,
   author = {Tapia, E. and Donoso-Bravo, A. and Cabrol, L. and Alves, M.
   and Pereira, A. and \underline{\bf Rapaport}, A. and Ruiz-Filippi, G.},
   title = {A methodology for coupling DGGE and mathematical modelling: Application in bio-hydrogen production},
   booktitle = {13th IWA World Congress on Anaerobic Digestion, Santiago de Compostela (Spain)},
   note = {},
   pages={},
   year = {2013},
   AERES = {C-ACTI},
   URL = {},
},
		 
		 
@inproceedings{Proc125,
   author = {\underline{\bf Rapaport}, A.},
   title = {Chemostat stabilisation through delayed buffering},
   booktitle = {The  SIAM Conference on Control and Applications
   (CT13), San Diego, July},
   note = {},
   pages={},
   year = {2013},
   AERES = {C-COM},
   URL = {},
},		 
		 
		 
		 
		 
@inproceedings{Proc126,
   author = {\underline{Bayen}, T. and Mairet, F. and Mazade, M.},
   title = {Fed-batch bioreactor with mortality rate},
   booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS) },
   note = {},
   year = {2013},
   AERES = {C-ACTI},
},
		 
		 
@inproceedings{Proc127,
   author = {\underline{Bayen}, T. and Mairet, F. and Martinon, P. and \underline{Sebbah}, M.},

   title = {Fed-batch bioreactor with mortality rate},
   booktitle = {ECC13 : European Control Conference},
   note = {},
   year = {2013},
   AERES = {C-ACTI},
},
		 
@inproceedings{Proc128,

   author = {\underline{Bayen}, T. and Silva, F.},
   title = {Weak and strong minima : from calculus of variation toward {PDE} optimization},
   booktitle = {First IFAC Workshop on Control of Systems Modeled by Partial Differential Equations (CPDE 2013)},
   note = {},
   year = {2013},
   AERES = {C-ACTI},
},
		 
@inproceedings{Proc129,
   author = { \underline{\bf Rapaport}, A. and Sieber, J. and Rodrigues,
   S. and Desroches, M.},
   title = {Extremum Seeking Via Continuation Techniques for Optimizing Biogas Production in the Chemostat},
   booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS)},
   note = {},
   year = {2013},
   AERES = {C-ACTI},
},
		 
@inproceedings{Proc130,
   author = {\underline{\bf Rapaport}, A. and \underline{Haidar}, I. and Harmand, J.},
   title = {The Buffered Chemostat with Non-Monotonic Response Functions},
   booktitle = {9th IFAC Symposium on Nonlinear Control Systems (NOLCOS)},
   note = {},
   year = {2013},
   AERES = {C-ACTI},
},
		 
	 
		 
@inproceedings{Proc131,
   author = {\underline{Bouhafs}, W. and Abdellatif, N. and Jean, F.
   and Harmand, J.},
   title = {Commande optimale en temps minimal d’un procédé biologique
      d’épuration de l’eau},
   booktitle = {CARI'12, Proceedings of the 11th African Conference
   on Research in Computer Science and Applied Mathematics, Algeria, October, 13-16},
   note = {},
   pages={},
   year = {2012},
   AERES = {C-ACTI},
   URL = {},
},
		 
@inproceedings{Proc132,
   author = {\underline{Bouhafs}, W. and Abdellatif, N. and Jean, F.
   and Harmand, J.},
   title = {Commande optimale en temps minimal d’un procédé biologique
      d’épuration de l’eau},
   booktitle = {Proceedings of the International
      Joint Conference CB-WR-MED Conference/ 2nd AOP’ Tunisia
      Conference for Sustainable Water Management. Tunis: April,
      24–27,},
   note = {},
   pages={93--94},
   year = {2013},
   AERES = {C-ACTI},
   URL = {},
},
		 
@inproceedings{Proc133,
   author = {\underline{Ghouali}, A. and Harmand, J. and \underline{\bf Rapaport}, A.
   and Moussaoui, A. and 
      Cherki, B. and \underline{Sari}, T.},
   title = {Contrôle optimal d’un bioréacteur de
      dépollution des eaux usées},
   booktitle = {CARI'12, Proceedings of the 11th African Conference
   on Research in Computer Science and Applied Mathematics, Algeria, October, 13-16},
   note = {},
   pages={},
   year = {2012},
   AERES = {C-ACTI},
   URL = {},
},
		 
		 
@inproceedings{Proc134,
   author = {\underline{\bf Campillo}, F. and Champagnat, N.},
   title = {An individual-based model for clonal plant dynamics},
   booktitle = {MAMERN11: 4th International Conference on
   Approximation Methods and Numerical Modelling in Environment and
   Natural Resources Saidia (Morocco) May 23-26},
   year = {2011},
   AERES = {C-ACTI},
   URL = {},
},		 
		 
@inproceedings{Proc135,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M.
and Larramendy, I.},
   title = {Stochastic models for the chemostat at different
scales},
   booktitle = {{15th Applied Stochastic Models and Data Analysis
International Conference (ASMDA 2013), June 25--28}},
   year = {2013},
   AERES = {C-COM},
   URL = {},
},
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
%% livres et chapitres de livre
		 
%% OS
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
@book{Book2,
   author = {Malisoff, M. and \underline{Mazenc}, F.},
   title = {Constructions of strict Lyapunov functions},
   publisher = {Springer},
   volume = {16},
   series = {Communications and Control Engineering Series},
   note = {},
   pages = {386 p.},
   year = {2009},
   AERES = {OS},

},
		 
@inbook{Inbook2,
   author = {\underline{Lobry}, C. and \underline{Sari}, T. and Yadi, Karim},
   title = {Coexistence of three predators competing for a single biotic resource},
   series = {Advances in the Theory of Control, Signals and Systems
   with Physical Modeling, J. Lévine and P. Mullhaupt (Editors)
Lecture Notes in Control and Information Sciences},
   pages = {309-322},
   volume = {407},
   note = {},
   year = {2011},
   AERES = {OS},
   URL = {},
},

@inbook{Inbook4,
   author = {Ranjard, L. and Dequiedt, S. and Jolivet, C. and Saby, N. and Thioulouse, J. and Harmand, J. and \underline{\bf Loisel}, P.and \underline{\bf Rapaport}, A. and Fall, S. and Simonet, P. and Joffre, R. and Chemidlin, N. and Maron, P.-A. and Mougel, C. and Martin, M. and Toutain, B. and Arrouays, D. and Lemanceau, P.},
   title = {Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative},
   series = {Sustainable Agriculture Volume 2},
   pages = {857-865},
   year = {2011},
   AERES = {OS},

},

@inbook{Inbook6,
   author = {\underline{Lobry}, C.},
   title = {La compétition dans le chémostat},
   series = {Des Nombres et des Mondes, E. Benoit (Editeur), Herman},
   address = {},
   note = {},
   year = {2013},
   pages = {119--187},
   AERES = {OS},
   URL = {},
},
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
%% Rapports techniques
		 
%% AP
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
@techreport{Report2,
   author = {\underline{\bf Campillo}, F. and Hervé, D. and \underline{Raherinirina}, A. and Rakotozafy, R.},
   title = {A Markov model of land use dynamics},
   note = {},
   number = {7670},
   type = {Rapport de recherche INRIA},
   year = {2011},
   AERES = {AP},

},

@techreport{Report3,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M. and Larramendy-Valverde, I.},
   title = {Stochastic models for the chemostat},
   note = {},
   number = {7458},
   type = {Rapport de recherche INRIA},
   year = {2010},
   AERES = {AP},

},

@techreport{Report4,
   author = {\underline{\bf Casenave}, C. and Dochain, D.},
   title = {European project {CAFE} {WP7}: Process monitoring and control - Deliverable 7.2: Full-scale performance of the control laws in different product manufacturing end users},
   note = {Funding: UE, 7th PCRD},
   number = {},
   type = {Contrat report},
   year = {2013},
   AERES = {AP},

},

@techreport{Report5,
   author = {\underline{\bf Casenave}, C. and Trelea, C. and Mouret, J.-R. and Sablayrolles, J.-M. and Passot, S. and Perret, B. and Fonseca, F. and Vilas, C. and Benkhelifa, H. and Leducq, D. and Alvarez, G. and Eisner-Schadler, V. and Kramer, J. and Togtema, A. and Grushkin, Y. and van der Sman, R. and Vollebregt , M.},
   title = {European project {CAFE} {WP3}: Process experiments - Deliverable 3.3: Test of optimal control strategies},
   note = {Funding: UE, 7th PCRD},
   number = {},
   type = {Contrat report},
   year = {2013},
   AERES = {AP},

},

@techreport{Report9,
   author = {\underline{\bf Rapaport}, A.},
   title = {{Rapport T0+06 ANR SYSCOMM DISCO}},
   type = {},
   note = {},
   year = {2010},
   AERES = {AP},

},

@techreport{Report10,
   author = {\underline{\bf Rapaport}, A.},
   title = {Proposal of {INRA-INRIA} team {MODEMIC} {M}odelling and {O}ptimisation of the {D}ynamics of {E}cosystems with {MIC}ro-organisms},
   note = {},
   type = {},
   year = {2011},
   AERES = {AP},

},

@techreport{Report11,
   author = {\underline{\bf Rapaport}, A.},
   title = {{Rapport mi-parcours ANR SYSCOMM DISCO}},
   note = {},
   year = {2011},
   AERES = {AP},

},

@techreport{Report12,
   author = {\underline{\bf Rapaport}, A.},
   title = {{Rapport T0+30 ANR SYSCOMM DISCO}},
   note = {},
   year = {2012},
   AERES = {AP},

},

@techreport{Report13,
   author = {\underline{\bf Rapaport}, A. and Auger, P. and Gensel, J. and Labiod, H. and Sebag, M.},
   title = {Modèles, systèmes d'information et gestion viable De l'environnement ({MOTIVE}) d'{IRSTEA} },
   institution = {},
   note = {},
   type = {Rapport du comité de visite de l'{AERES}},
   year = {2012},
   AERES = {AP},

},

@techreport{Report15,
   author = {van der Sman, R. and Vollebregt, M. and David, R. and Dochain, D. and Flick, D. and Benkhelifa, H. and Gonzalez-Ramirez, J. E. and Leducq, D. and Alvarez, G. and Arellano S., M. and Trelea, C. and Douania, I. and Passot, S. and Fonseca, F. and Vilas, C. and López-Quiroga, E. and Alonso, A. A. and Binns, M. and Xie, W. and Theodoropoulos, C. and \underline{\bf Casenave}, C.},
   title = {European project {CAFE} {WP4}: Model reduction, validation and simulation - Deliverable 4.2: Portable and documented simulation software for each demonstration process},
   note = {Funding: UE, 7th PCRD},
   type = {Contrat report},
   year = {2013},
   AERES = {AP},

},

		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
%% articles non publiés
		 
%% preprint
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 

@unpublished{Draft2,
   author = {\underline{Bayen}, T. and \underline{\bf Rapaport}, A. and \underline{Sebbah}, M.},
   title = {Optimal synthesis for a minimum time problem in the plane with a triangle control set},
   year = {2013},
   AERES = {Preprint},
   note={hal-00798651},
   URL = {http://hal.inria.fr/hal-00798651}		 
},

@unpublished{Draft3,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M.},
   title = {A spatially explicit Markovian individual-based model for terrestrial plant dynamics},
   year = {2010},
   AERES = {Preprint}, 
   note={inria-00502559},
   URL = {http://hal.inria.fr/inria-00502559},		 
},

@unpublished{Draft4,
   author = {\underline{\bf Campillo}, F. and \underline{Lobry}, C.},
   title = {L'effet de la migration dans la relation ressource-consommateur du point de vue de "l'atto-fox problem"},
   year = {2013},
   AERES = {Preprint},
   note={hal-00800370},
   URL = {http://hal.inria.fr/hal-00800370},			 
},

@unpublished{Draft5,
   author = {\underline{Deygout}, C. and Lesne, A. and \underline{\bf Campillo}, F. and \underline{\bf Rapaport}, A.},
   title = {A multiscale approach for biofilm modelling: application for growth in a plug flow reactor},
   year = {2011},
   AERES = {Preprint},
   note={hal-00604377},
   URL = {http://hal.inria.fr/hal-00604377},		 
},

@unpublished{Draft9,
   author = {\underline{\bf Rapaport}, A. and \underline{Haidar}, I. and Harmand, J.},
   title = {The buffered chemostat with non-monotonic response functions},
   year = {2012},
   AERES = {Preprint},
   note={hal-00766243},
   URL = {http://hal.inria.fr/hal-00766243},		 
},

@unpublished{Draft10,
   author = {\underline{\bf Rapaport}, A. and Sieber, J. and Rodrigues, S. and Desroches, M.},
   title = {Extremum seeking via continuation techniques for optimizing biogas production in the chemostat},
   year = {2013},
   AERES = {Preprint},
   note={hal-00787510},
   URL = {http://hal.inria.fr/hal-00787510},		 
},

@unpublished{Draft12,

   author = {\underline{Bayen}, T. and Mairet, F.},

   title = {Optimization of the separation of two species in a chemostat},


   year = {2013},
   AERES = {Preprint},
   note={hal-00817147},
   URL = {http://hal.inria.fr/hal-00817147}		 
},

@unpublished{Draft13,

   author = {\underline{Bayen}, T. and Mairet, F. and Mazade, M.},

   title = {Optimal feeding strategy for the minimal time problem of a fed-batch bioreactor with mortality rate},


   year = {2013},
   AERES = {Preprint},
   note={hal-00759058},
   URL = {http://hal.inria.fr/hal-00759058}		 
},

@unpublished{Draft15,
   author = {\underline{\bf Campillo}, F. and \underline{Fritsch}, C.},
   title = {A mass-structured individual-based model of the chemostat:
   convergence and simulation},
   note={hal-00850959, version 2},
   year = {2013},
   AERES = {Preprint},
   URL = {http://hal.inria.fr/hal-00850959},
},		 
		 
@unpublished{Draft17,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M. and Larramendy-Valverde,
   I.},
   title = {{Approximation of the Fokker-Planck equation of the stochastic
chemostat}},		 
   note={hal-00644250},
   year = {2011},
   AERES = {Preprint},
   URL = {http://hal.inria.fr/hal-00644250},	 
},

@unpublished{Draft18,
   author = {\underline{\bf Campillo}, F. and \underline{Joannides}, M. and Larramendy-Valverde,
   I.},
   title = {{Estimation of the parameters of a stochastic logistic growth model}},		 
   note={hal-00842291},
   year = {2013},
   AERES = {Preprint},
   URL = {http://hal.inria.fr/hal-00842291},	 
},
		 
		 
@unpublished{Draft19,
   author = {\underline{\bf Campillo}, F. and \underline{Lobry}, C.},
   title = {{Effect of population size in a Prey-Predator model}},
   note={hal-00645619},
   year = {2011},
   AERES = {Preprint},
   URL = {http://hal.inria.fr/hal-00645619},	 
},		

		 
@unpublished{Draft20,
	Aeres = {Preprint},
	Author = {\underline{\bf Campillo}, F. and \underline{Lobry}, C.},
	Date-Added = {2013-09-04 08:21:04 +0000},
	Date-Modified = {2013-09-04 08:21:28 +0000},
	Note = {hal-00841986},
	Title = {{Le ch{\'e}mostat IBM}},
	Url = {http://hal.inria.fr/hal-00841986},
	Year = {2010},
	Bdsk-Url-1 = {http://hal.inria.fr/hal-00800370}}
		 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
%% divers (logiciels, brevets...)
		 
%% AP
%% ASCL
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
@misc{Misc6,
   author = {\underline{\bf Campillo}, F.},
   title = {Sequential {M}onte {C}arlo (particle filtering) for tracking (toolbox)},
   note = {},
   year = {2009},
   AERES = {AP},

},

@misc{Misc8,
   author = {\underline{\bf Campillo}, F. and Champagnat, N.},
   title = {{IBM} of clonal plant dynamics (simulation software)},
   note = {},
   year = {2012},
   AERES = {AP},

},

@misc{Misc19,
   author = {\underline{\bf Loisel}, P. and \underline{Haegeman}, B. and Hamelin, J. and Harmand, J. and Godon, J.-J.},
   title = {A method for measuring the biological diversity of a sample},
   number = {08843131.7},
   pages = {42 p.},
   month = {Patent EP 2 203 744 B1},
   note = {},
   ISBN = {EP 2 203 744 B1},
   year = {2011},
   AERES = {BRE},

},


@misc{Misc22,
   author = {\underline{\bf Rapaport}, A. and Harmand, J. and Auffray, V. and Houlès, V. and Jallas, E. and Ricordeau, M. and Mirman, F.},
   title = {{VITELBIO} (web service)},
   pages = {},
   note = {},
   year = {2010},
   URL = {http://vitelbio.itkweb.fr/},
   AERES = {AP},

},

@misc{Inbook5,
   author = {\underline{\bf Rapaport}, A. and Terreaux, J.P.},
   title = {Cigale ou fourmi ? {Q}uand la programmation dynamique guide nos décisions},
   series = {Mathématiques de la Planète Terre : un jour, une brève. Blog français de l'initiative internationale},
   address = {},
   note = {},
   year = {2013},
   AERES = {ASCL},
   URL = {},
},

@misc{Misc27,
	Author = {\underline{\bf Rapaport}, A. and  Harmand, J. and \underline{Haidar},
	I.},
	Month = {February},
	Note = {Brevet INRA-U. Montpellier II BNT 2100 61 FR 00},
	Title = {Stabilisation de proc{\'e}d{\'e}s biotechnologiques pr{\'e}sentant une instabilit{\'e} due {\`a} une inhibition par le substrat, par des configurations de type "poche"},
	Year = {2012},
	AERES = {BRE},
},
		 
@misc{Misc28,
	Author = {\underline{\bf Rapaport}, A. and Rousseau, A. and Harmand, J.},
	Month = {June},
	Note = {Brevet INRA-INRIA EBE-EG BFF 13P0171 - FR 13 55129},
	Title = {Procédé de traitement d'une ressource fluide,
	programme d'ordinateur et module de traitement associés},
	Year = {2013},
	AERES = {BRE},
},		 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
%% theses et HDR
		 
%% THE
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
@phdthesis{These5,
   author = {\underline{El Hajji}, M.},
   title = {Modélisation et analyse mathématique pour les écosystèmes
   microbiens - approche par les systèmes dynamiques},
   school = {Université Montpellier II},
   note = {},
    year = {2010},
   AERES = {THE},
   URL = {},
},
		 

@phdthesis{These6,
   author = {\underline{Haidar}, I.},
   title = {Dynamiques microbiennes et modélisation des cycles biochimiques terrestres},
   school = {Université Montpellier II},
   note = {},
    year = {2011},
   AERES = {THE},
   URL = {},
},

@phdthesis{These20,
   author = {\underline{Benyahia}, B.},
   title = {Modélisation et observation des bioprocédés à membranes : application à la digestion anaérobie},
   school = {Université Montpellier II et Université de Tlemecen (Algérie)},
   note = {},
    year = {2012},
   AERES = {THE},
   URL = {},
},		 		 
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
		 
%% rapports de stage
		 
%% THE
		 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%		 

@mastersthesis{Memoire7,
	Author = {Rojas-Palma, A.},
	School = {Catholic University of Valparaiso, Chile},
	Month = {November},
	Title = {Comparison of {MINC} and {MRMT} configurations: the n-dimensional case},
	 type = {{MSc Engineeing Mathematics report}},
         Year = {2012},
         AERES={THE},
},
		 
@mastersthesis{Memoire8,
	Author = {Barbier, S.},
	School = {Universit{\'e} de Reims Champagne-Ardennes},
	Month = {September},
	type = {Master {M2} d'Ingéniérie mathématique},
	Title = {Mod\'elisation de strat\'egies de d\'epollution d'une ressource hydrique en milieu naturel},
	Year = {2012},
	AERES={THE},
},
		 
@mastersthesis{Memoire9,
	Author = {Riqueleme, V.},
	School = {Departamento de Ingenieria Matematica, Univ. Chile, Santiago},
	Title = {Bioremediation of natural water resources via optimal
	control techniques},
	type = {{MSc Engineeing Mathematics report}},	 
	Year = {2011},
	AERES={THE},
},		 
		 
@mastersthesis{Memoire10,
   Author = {\underline{Raherinirina}, A.},
   School = {{\'E}cole Nationale d'Informatique \&\ Universit{\'e} de Fianarantsoa},
   Title = {Mod{\'e}lisation markovienne de dynamiques agraires},
   Type = {M{\'e}moire de Dipl{\^o}me d'{\'E}tude Approfondie Informatiques et Math{\'e}matiques Appliqu{\'e}es},
   Year = {2008},
   AERES={THE},
},
		 
@mastersthesis{Memoire12,
   Author = {Coulibaly, A.},
   School = {Ecole des Ponts et Chaussées},
   Title = {Compétition entre espèces microbiennes dans le chémostat},
   Type = {M{\'e}moire de stage de 1ère année},
   Year = {2008},
   AERES={THE},
},		 
		 
@mastersthesis{Memoire13,
   Author = {Gidoin, C.},
   School = {Université de Montpellier II},
   Title = {Interactions entre deux plantes pour le prélèvement de deux nutriments: approche conceptuelle et numérique},
   Type = {Mémoire de {M}aster {M1}, Ecologie fonctionnelle et développement durable},
   Year = {2009},
   AERES={THE},
},		 
		 
@mastersthesis{Memoire14,
   Author = {Fendri, S. and Kaprielian, S.},
   School = {Ecole des Ponts et Chaussées},
   Title = {Modélisation informatique d'un réseau de chémostats dans le cadre du projet VITELBIO},
   Type = {Mémoire de stage de 1ère année en bin\^ome},
   Year = {2009},
   AERES={THE},
},
@mastersthesis{Memoire15,
   Author = {Perrusel, E.},
   School = {Institut National des Sciences appliquées de Toulouse},
   Title = {Conception et développement d'un logiciel convivial de simulation d'un modèle dynamique de réseau de chémostats},
   Type = {Mémoire de stage de 4ème année},
   Year = {2009},
   AERES={THE},
},
		 
@mastersthesis{Memoire16,
   Author = {Resnais, G.},
   School = {Institut National des Sciences appliquées de Toulouse},
   Title = {Modélisation de la biodégradation des carbone et nitrate en tubes PVC avec présence de biofilms},
   Type = {Mémoire de stage de 4ème année},
   Year = {2010},
   AERES={THE},
},		 

@mastersthesis{Memoire17,
   Author = {Bello Rivas, J.},
   School = {Universidad Complutense de Madrid (Spain)},
   Title = {Optimal design of dispersive bioreactors for wastewater treatment},
   Type = {{MSc Engineeing Mathematics report}},
   Year = {2010},
   AERES={THE},
},
		 
@mastersthesis{Memoire18,
   Author = {Zhong, L. Y.},
   School = {Institut National des Sciences appliquées de Lyon},
   Title = {Modélisation d'oscillations dans la croissance de levures en chémostat},
   Type = {Mémoire de stage de 4ème année},
   Year = {2011},
   AERES={THE},
},
		 

@mastersthesis{Memoire19,
   Author = {Dayle, F.},
   School = {U. Montpellier II},
   Title = {Modèles probabilistes d'assemblage d'espèces, sous contrainte de règles},
   Type = {Mémoire de stage de {M}aster {M1}, Ecologie fonctionnelle et développement durable},
   Year = {2011},
   AERES={THE},
},

		 
